PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA33G00259
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 398aa    MW: 43940.9 Da    PI: 6.3138
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA33G00259genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-07127147526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G Ck Gd+C F+Hg
  AA33G00259 127 ACPDFRK-GGCKKGDTCEFSHG 147
                 7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.0E-5122148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84123149IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5127147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4127149IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568157181IPR000571Zinc finger, CCCH-type
SMARTSM003560.53157180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MMIGETQRAY PTVHIPPWPL SDDFTATDLY SPVIGSPDGG NSNVLETLTA LQRYLPSNEP  60
DPDSDPDLSG PDSPIDAYSC DHFRMYEFKV RRCARGRSHD WTECPYAHPG EKARRRDPRK  120
FHYSGTACPD FRKGGCKKGD TCEFSHGVFE CWLHPARYRT QPCKDGGNCR RRVCFFAHSP  180
DQLRVLPQQS PDRVDSFEGM SPIRQSCSRA FQFSISPSSG SPPMSPRADS EIQSLSRSLG  240
GNSVSDVVSL SRSLGGNSVN DVVSLSRSLG GNSVNDVVAS IRNLQLNKVK SLPSSYNNQM  300
RCYGSGFGSG SPRGSVLGPG FRSLPTTPTR PEIGYLDIWE TGLEEEPVME RVESGRELRA  360
KMFEKLSKEN CLDRVDPDPN QGSGEADPDL GWVSELVM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743556.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
RefseqXP_013743557.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLV4MCX50.0V4MCX5_EUTSA; Uncharacterized protein
TrEMBLA0A0D3D2I30.0A0A0D3D2I3_BRAOL; Uncharacterized protein
STRINGBra011087.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-164C3H family protein